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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTCGAAGGCGTAGAGTGAGATCCGAACGATGAAGAGAGTATTCGGCGTCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccctttccctctctcaattatcaattccgtttattcgtagatctgttcaattttcgcatttggtttcgtgttttgaagctaagataatatacat...

Basic information

species Glycine max
transcript GLYMA20G33630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174856|gb|HO014773.1|HO014773
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|254325618|gb|GR838499.1|GR838499
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|298171425|gb|HO016457.1|HO016457
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|298163684|gb|HO012417.1|HO012417
EST:     TCAAGAAGAACAAGGATCCACTCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|207698554|gb|GD679239.1|GD679239
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|192326636|gb|FK018853.1|FK018853
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|207811619|gb|GD783988.1|GD783988
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGG
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGG
EST: gi|208048063|gb|GD849206.1|GD849206
EST:     TCAAGAAGAACAAGGATCCA-CCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|151397618|gb|EV267491.1|EV267491
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|298199136|gb|HO042499.1|HO042499
EST:     TCAAGAAGAACAAGGACCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|192314082|gb|FK010362.1|FK010362
EST:     TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
EST: gi|192294647|gb|FG986496.1|FG986496
EST:     TCGAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGG                         ATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC
genomic: TCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccct ... tatattccagATTACAAAACGAGGTGACACGGTGGATGACAAGATTAAGAAGCTTGATGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTTCGAAGGCGTAGAGTGAGATCCGAACGATGAAGAGAGTATTCGGCGTCAAGAAGAACAAGGATCCACCCCCTTCCATTCAGGATGCTTCCGAAAGGgttcttccctttccctctctcaattatcaattccgtttattcgtagatctgttcaattttcgcatttggtttcgtgttttgaagctaagataatatacat

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc