1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcatgcattttgttttcttaacgcaggattttacttttactatctatgcatgcattttacttttttcctcaattacacactaaacgcaggattttaattttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
species | Glycine max |
transcript | GLYMA20G33580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|192302699|gb|FG993719.1|FG993719
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: GCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|120491293|gb|EH219460.1|EH219460
genomic: GCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|192302698|gb|FG993718.1|FG993718
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|8827104|gb|BE210834.1|BE210834
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCAGTGCTAT-CTCTTCC-A-GEST: gi|298163106|gb|HO011839.1|HO011839
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATT-CTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|120491336|gb|EH219503.1|EH219503
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|151400704|gb|EV270518.1|EV270518
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAGEST: gi|192302195|gb|FG997275.1|FG997275
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
EST: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGG GGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
genomic: ATCTATGCCGCAAATGCTTCATTTGAGGATCCACTTATGTGTGCCCACGGgtatgcatgc ... tttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
attttacttttttcctcaattacacactaaacgcaggattttaattttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
ttttact CT-rich tract
attttaattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatgcattttgttttcttaacgcaggattttacttttactatctatgcatgcattttacttttttcctcaattacacactaaacgcaggattttaattttactgcagGGTGAAACAGATCAAATCAGCATTCTATACTCTTCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA