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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTAAAGCGCCACGAATTCTATACACCACCCAACACTTGGTGAACAATTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcataacctaaccattgcttaacgcattcttattcttattcttatgatcaattctctgctattcgttttgtttgatttgaag

Basic information

species Glycine max
transcript GLYMA20G33580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185401|gb|HO030614.1|HO030614
EST:     TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
genomic: TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|120491293|gb|EH219460.1|EH219460
EST:     TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
genomic: TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|192302698|gb|FG993718.1|FG993718
EST:     TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCCGCAAACAAGCGCT
genomic: TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|8827104|gb|BE210834.1|BE210834
EST:     CTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
genomic: CTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|298163106|gb|HO011839.1|HO011839
EST:     TTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAGGCGCT
genomic: TTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|120491336|gb|EH219503.1|EH219503
EST:     TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
genomic: TTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
EST: gi|192302195|gb|FG997275.1|FG997275
EST:     GCTGCAATGGCTACTCACTCTGCTG                         CGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT
genomic: GCTGCAATGGCTACTCACTCTGCTGgtaatctcat ... tgatttgaagCGACGGAGAGGACTTACAAAGAATCATTCGATTCCGCTGCAAACAAGCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGTAAAGCGCCACGAATTCTATACACCACCCAACACTTGGTGAACAATTCTGTTACGCTTCCGACAAACTTTGCTGCAATGGCTACTCACTCTGCTGgtaatctcataacctaaccattgcttaacgcattcttattcttattcttatgatcaattctctgctattcgttttgtttgatttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC