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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGgtacttatacatgataaaatatataatttgtgttgatgaacaaaaaatacaaccctacattttatgcaggtatctgtagtttatactgtttacttattctgaacactggttttgtttcttcctttcggcaaattgcaatttcttgcag

Basic information

species Glycine max
transcript GLYMA20G33300.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33300.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 6
TGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGgtacttatacatgataaaatatataatttgtgttgatgaacaaaaaatacaaccctacattttatgcaggtatctgtagtttatactgtttacttattctgaacactggtt-ttgtttcttcctttcggcaa-attgcaatttcttgcag------------
||||||  |||||||| || ||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| ||| ||||| ||||| |||||||||||  ||| | || |   || | |  ||| |     ||        ||  | |  |   ||||||       || |   | |||  ||        || | |   |  |||  ||||||||||  |   |   | ||   |   ||| |             
TGAGTGTAGAGACATCGGAGGATGGATCTAAATGGGGTCATGTGAGGAAAGGAACTTGTTGTGTTTGTTGTGATAGCCACATCGACTCTCTATTGTACAGgta--tatgcctgctt--atttgtgctttttccctctggg------atctatcttttttttttatcagaacctccgggatctatcttgggactaccttttaatttcgtgttgctgtttcttccccttatctttactgtcttccgttgaaaaaaaatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389021|gb|CA852228.1|CA852228
EST:     GGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAG                         ATGTGGGCACATGTGCACTTGTTCGAAATGTGCCAATGAGTTAATTCGTGG
genomic: GGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGgtacttatac ... tttcttgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGTGG
EST: gi|15337271|gb|BI497927.1|BI497927
EST:     GGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAG                         ATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGT
genomic: GGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTACAGgtacttatac ... tttcttgcagATGTGGGCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAATTCGT