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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTgtatgtatctttcttatctaaattctttatgcacatgtattttacttttagttacctatggaatggcacatagaatatagtattatgttgcttcttcctg...

Basic information

species Glycine max
transcript GLYMA20G33300.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33300.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0019g05390.t01 (Vitis vinifera), 5'ss of exon 4
GGTGTTGCCTTCTCCACCAGTACCTCCACCACAACCTCTGTGGCACCAGGATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTgtatgtatctttcttatctaaattctttatgcacatgtattttacttttagttacctatggaatggcacatagaatatagtattatgttgcttcttcctg---
|||| | || |||||||||||||| |||||||| || || |||||||||||||| ||||| ||    ||| |||| || |||||||||||||| ||||||||  |    | ||| |||||  | |||| |    |   || | | |     | |  ||  ||    | |      | || |   ||    ||  || |||   
GGTGCTACCATCTCCACCAGTACCCCCACCACAGCCACTTTGGCACCAGGATTTACATCACACAAATTGGCCTCGTCACAGCATGCATCGTTCAGAAATTgtgagc-catctctcatctatctccttttttagtagaaatataattacatataagttactga-catctccccagttgtattcacat-caactattttctgagc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389021|gb|CA852228.1|CA852228
EST:     ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATT                         GAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA
genomic: ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTgtatgtatct ... ttgggaacagGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA
EST: gi|15337271|gb|BI497927.1|BI497927
EST:     ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATT                         GAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA
genomic: ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTgtatgtatct ... ttgggaacagGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA
EST: gi|13312116|gb|BG405767.1|BG405767
EST:     ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATT                         GAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA
genomic: ATTTGCATCAAACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTgtatgtatct ... ttgggaacagGAGTGGGAGATAATGAATGATTTAAGATCAGACATGGCAAGACTTCAGCAA