1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taattatctgtgcttatggttctttatctcctgttattcacattgtgcttagctttctttatctccagttattcatattacatgttaatttatattgtagGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTA
species | Glycine max |
transcript | GLYMA20G33300.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAG GATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAEST: gi|15337271|gb|BI497927.1|BI497927
genomic: GTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAGgtagtgaaaa ... tatattgtagGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGA
EST: GTTGCAGCGCTCTGTTAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAG GATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGA
genomic: GTTGCAGCGCTCTGTCAGACAGGAAGTATCTGCTGCTCTGAACCGCTCAGgtagtgaaaa ... tatattgtagGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGA
tgcttagctttctttatctccagttattcatattacatgttaatttatattgtagGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTA
tgttaat putative branch site (score: 3)
ttattcatattacatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattatctgtgcttatggttctttatctcctgttattcacattgtgcttagctttctttatctccagttattcatattacatgttaatttatattgtagGATTGAGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAGAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCTCTTTTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - tctgtgc
- - - - - - - - - - - - - -ctcctgt
- - - - - - - - - - - - - - - - - -attcaca
- - - - - - - - - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt