Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTGAGGAGATTCAAGTCTATCTCAAGTATTTTGACATCACTTTGATACCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtccatgctcttttgtttgttggcttcaatttctggcatacttcttcggtttgacttgtgtttgtttcgttttattatgttacacgtggtaaata...

Basic information

species Glycine max
transcript GLYMA20G33110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33110.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g05620.t01 (Vitis vinifera), 5'ss of exon 3
ACTCTGAGGAGATTCAAGTCTATCTCAAGTATTTTGACATCACTTTGATACCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtccatgctc----ttttgtttgttggcttcaatttctggcatacttcttc-ggtttgac-ttgtgtttgtttcgttttattatgttacacgtggtaaata
| || ||||| |||||||| ||| ||||||| |||||||| |||||||||||||| || || || || |||||||||||||||||||| ||||||| ||||||     | || |     | || ||| || | ||   |||    |||  ||   | ||    || || ||    | | ||    |||| | | ||  |||     
ATTCAGAGGATATTCAAGTTTATGTCAAGTACTTTGACATAACTTTGATACCATCAACGGTCTTTTTCTTCAATGCTCATCACATGAAGATGGATTCTGGgtacaagtcttgttgaaaatattatttctttggtttttttttaatcatgttttcactggagaaacattctggaactatggtaaccttatttca-acaaggt-----

upper sequence: GLYMA20G33110.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S12_196V6.1 (Physcomitrella patens), 5'ss of exon 4
ACTCTGAGGAGATTCAAGTCTATCTCAAGTATTTTGACATCACTTTGATACCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtccatgctcttttgtttgttggcttcaatttctggcatacttcttcggtttgacttgtgtttgtttcgttttattatgt-tacacgtggtaaata
|  |    || ||||||   ||  | ||||| |||||||| ||| | || ||| | ||  | |||||||||||||| ||||||||||| ||||| | |||||| ||| |||||| |      | ||  | | | |  |  || |     |     || |  | |  |  |   |    | ||| | |    |  || || |
ATGCCCCTGAAATTCAATCTTACATTAAGTACTTTGACATTACTCTCATTCCAGCCACGATTTTCTTTTTCAATGCGCATCACATGAAGATGGACTCTGGgtacggtgcatgctatcg-acatattttccttattaacacgcttcacattagtccttaatatatcctcttggtgaaaaaatatttctttttgcagtgaaca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167255|gb|HO010694.1|HO010694
EST:     CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGG                         GACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
genomic: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtcca ... ctatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
EST: gi|19269994|gb|BM886250.1|BM886250
EST:     CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGG                         GACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
genomic: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtcca ... ctatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT