1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcgattcccctaaattgctgggccgtgattatcttgtattctgacttgtatcgattaatttagggagaagtcttttgacacttattgctactatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTTCGTAGATGTTGTAGAG
species | Glycine max |
transcript | GLYMA20G33110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGG GACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTTEST: gi|19269994|gb|BM886250.1|BM886250
genomic: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtcca ... ctatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
EST: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGG GACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
genomic: CCATCTACAGTGTTCTTTTTCAATGCTCATCACATGAAAATGGATTATGGgtatggtcca ... ctatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTT
ttgtatcgattaatttagggagaagtcttttgacacttattgctactatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTTCGTAGATGTTGTAGAG
ttttgac putative branch site (score: 3)
attaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgattcccctaaattgctgggccgtgattatcttgtattctgacttgtatcgattaatttagggagaagtcttttgacacttattgctactatatgtagGACTGCTGATCATACTAAATGGATTGGTGCTTTTTACGCAAAGCAAGACTTCGTAGATGTTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - ttcccct
- - - - - - -attgctg
- - - - - - - - - - ggccgtg
- - - - - - - - - - - - - - - - - - - ttctgac