1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaaaattttggccagactttggaaaacaggttttgtatttatcaatcatcaaagcatagtgtatgtgaatttgattgaatattaaaatattttggtgaagGAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATACCATCATCAGAGACACCTTTGATAAAGTCGTGGTCCTCCGCTTTGGTCGT
species | Glycine max |
transcript | GLYMA20G33110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCATCTTGAAGAAGTGTTATCTGCTGTGCGCCTTAGGTCATCGTACCG GAAAATGAGTGACATGTTAACGACATTTACGAAGAAGAAAGAGGTGGATACEST: gi|19269994|gb|BM886250.1|BM886250
genomic: TGCCATCTCGAAGAAGTGTTATCTGCTGTGCGCCTTAGGTCATCGTACCGgtaagtttac ... tttggtgaagGAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATAC
EST: TGCCATCTCGAAGAAGTGTTATCTGCTGTGCGCCTTAGGTCATCGTACCG GAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATAC
genomic: TGCCATCTCGAAGAAGTGTTATCTGCTGTGCGCCTTAGGTCATCGTACCGgtaagtttac ... tttggtgaagGAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATAC
tcatcaaagcatagtgtatgtgaatttgattgaatattaaaatattttggtgaagGAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATACCATCATCAGAGACACCTTTGATAAAGTCGTGGTCCTCCGCTTTGGTCGT
atttgat putative branch site (score: 5)
tgtatgtgaatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaattttggccagactttggaaaacaggttttgtatttatcaatcatcaaagcatagtgtatgtgaatttgattgaatattaaaatattttggtgaagGAAAATGAGTGACATGTTAACAACATTTACGAAGAAGAAAGAGGTGGATACCATCATCAGAGACACCTTTGATAAAGTCGTGGTCCTCCGCTTTGGTCGT
- - - - - - - gactttg
- - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - -caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt