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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGGTGGATGGAAGGACCGCACAACAGTGGAAGATATGGATCTGGCTGTCCGTGCTGGTCTCAAAGGCGGGAAATTTGTGTATCTTAGCGATCTCAAGgtatcactgaaacacgctgcgcatttagtttcactgtttatactcaggagtttgttcaatgagttacttagaaaagattgcacaaaaagtatttcagttatacatcaagtttctgttgagtcttttctcctatactgagttgtttatttcatataacaatttttaactttatgtaaataaatttag

Basic information

species Glycine max
transcript GLYMA20G32990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32990.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 5'ss of exon 5
AGCTGGTGGATGGAAGGACCGCACAACAGTGGAAGATATGGATCTGGCTGTCCGTGCTGGTCTCAAAGGCGGGAAATTTGTGTATCTTAGCGATCTCAAGgtatcactgaaacacgctgcgcatttagtttcactgtttatactcagg-agtttgttcaatgagttacttagaaaagattgcacaaaaagtatttcagtta-tacatcaagtttctgttgagtcttttctcctatactgagttgtttatttcatataacaatttttaactttatgtaaataaatttag
 || || |||||||||||||| || |||||||| ||||||||  |||| ||| | ||| |||| |||||| ||||||| || ||| |  | |  ||||||||||   | |       | | ||| |     ||   || || |  |   | |||||   |     | |||||       |  |   |    |||  |     || |||||  | ||  |                                                                     
GGCAGGAGGATGGAAGGACCGGACCACAGTGGAGGATATGGACTTGGCAGTCAGGGCTAGTCTGAAAGGCTGGAAATTCGTATATGTGGGTGCCCTCAAGgtatggttta------ttacccatatgagaacatgcttcatcccaaaacattttgtaggaaagccttcttagttgtttctatatggacctgattgtaaacgctaaatcaatatacttctag-------------------------------------------------------------------