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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtattactagagttatttcctttaataaacctcttttttttattcaaaagaaaaaattgttatgacatggattgtttcttgaaatagtttttttttttttttttactgaagttaaagtttttgtgggtactgtttcattggttgcagGTGTATCAATTGTCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGGTTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG

Basic information

species Glycine max
transcript GLYMA20G32990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0074g00500.t01 (Vitis vinifera), 3'ss of exon 1
gtaggtattactagagttatttcctttaataaacctcttttttttattcaaaagaaaaaattgttatgacatggattgtttcttgaaatagtttttttttttttttttactgaagttaaagtttttgtgggtactgtttcattggttgcagGTGTATCAATTGTCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGGTTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
                                                    |  ||| | | | || |     ||    || ||||||  ||| |  | |    ||  ||         | |||| ||  |  ||||||      ||||||| || ||  | || ||||||||||||||||| || |||||||| ||||| ||  | || ||||||||||| || |||||||| ||||||| |||||||
--------------------------------------------------gtaccaaataatatcatcatgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgctt-ttgtttc------tgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAAAGAATCATAATTCAAGTTCTGGACGATTCCACCGACCCAACCATTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttttttttactgaagttaaagtttttgtgggtactgtttcattggttgcagGTGTATCAATTGTCAATTGGAGCTGCATGTGGGCTATCATGGCCATCTGATAGGGTTATTATTCAAGTTCTTGATGATTCCACTGACCCAATCATTAAG
                                        tttcatt  CT-rich tract
                aagttaaagttttt  TA-rich tract