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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCTTGTAGGACAGCAACTAGGGGAAGCTTTCCACTGAATGGAACTTACTTTCAAGTTAATGAGgtatgtgtaatcaaagcttagataatattcaataatctttgcaactctaccctcattttgaacttcactaatcaacgccaaatttcataaacctttttatcatcatgaag

Basic information

species Glycine max
transcript GLYMA20G32960.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32960.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0074g00450.t01 (Vitis vinifera), 5'ss of exon 16
ATACCTTGTAGGACAGCAACTAGGGGAAGCTTTCCACTGAATGGAACTTACTTTCAAGTTAATGAGgtatgtgtaatcaaagcttagataatattcaataatctttgcaactctaccctcattttgaacttcactaatcaacgccaaatttcataaacctttttatcatcatgaag
||||| ||||| ||||| |  || || ||||||||||| ||||| || || ||||||||||||||||||  | | ||     |||      |  | || |   |||         |  |   |   | |  ||| | ||      |    |   ||| | |   | || |      
ATACCATGTAGAACAGCCATGAGAGGTAGCTTTCCACTCAATGGCACATATTTTCAAGTTAATGAGgtaaatcttatt----ctttctctctgctgaacatattttctgttaactctttggatggtagcaccaccactccctaaaatgagtttaaaaacatggaaccaac------

upper sequence: GLYMA20G32960.1 (Glycine max), 5'ss of exon 24
lower sequence: PP1S226_20V6.1 (Physcomitrella patens), 5'ss of exon 19
ATACCTTGTAGGACAGCAACTAGGGGAAGCTTTCCACTGAATGGAACTTACTTTCAAGTTAATGAGgtatgtgta---atcaaagcttagataatattcaataatctttgcaactctaccctcatttt-gaacttcactaatcaacgccaaatttcataaacctttttatcatcatgaag
 | || || || || || |  |  ||    |||||  |||||||||| || ||||||||||||||||||||  ||    ||   |   ||  ||  ||||||   || |   |  | |   | ||    ||| || | | ||| |                                   
GTGCCATGCAGAACTGCCAACAAAGGCTCTTTTCCTTTGAATGGAACATATTTTCAAGTTAATGAGgtatgcatatttgtcccggaccagtcaagtttcaatgcactgtatgaggcaagtttgataagagaaattgattcatccag----------------------------------

upper sequence: GLYMA20G32960.1 (Glycine max), 5'ss of exon 24
lower sequence: PP1S226_20V6.2 (Physcomitrella patens), 5'ss of exon 19
ATACCTTGTAGGACAGCAACTAGGGGAAGCTTTCCACTGAATGGAACTTACTTTCAAGTTAATGAGgtatgtgta---atcaaagcttagataatattcaataatctttgcaactctaccctcatttt-gaacttcactaatcaacgccaaatttcataaacctttttatcatcatgaag
 | || || || || || |  |  ||    |||||  |||||||||| || ||||||||||||||||||||  ||    ||   |   ||  ||  ||||||   || |   |  | |   | ||    ||| || | | ||| | |     ||    |                     
GTGCCATGCAGAACTGCCAACAAAGGCTCTTTTCCTTTGAATGGAACATATTTTCAAGTTAATGAGgtatgcatatttgtcccggaccagtcaagtttcaatgcactgtatgaggcaagtttgataagagaaattgattcatccaggttctcttctgcag--------------------