Sequence
atgc intronic sequence ATGC exonic sequence...tgctttaggtattgcagttttctcacatgatcattgatgacactcccattcagatagttattttcctgcttttgaacattcaatttcattgtatttgcagATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCCTATTGCGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTG
Basic information
species | Glycine max |
transcript | GLYMA20G32920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151396580|gb|EV266457.1|EV266457EST: CCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCA ATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCT
genomic: CCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAgtatgttcat ... gtatttgcagATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCT
EST:
gi|151406688|gb|EV276503.1|EV276503EST: CCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCA ATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCT
genomic: CCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCAgtatgttcat ... gtatttgcagATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccattcagatagttattttcctgcttttgaacattcaatttcattgtatttgcagATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCCTATTGCGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTG
aatttcattgtattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctttaggtattgcagttttctcacatgatcattgatgacactcccattcagatagttattttcctgcttttgaacattcaatttcattgtatttgcagATGCACAGTCTGCCTCTCAGAATACCAAGGTGAGGATATGCTGCGTATCCTCCCCTATTGCGGACACTCCTTCCATGTGACCTGCATAGACTTATGGCTG
tgcttta
- - - - - - tgcagtt
- - - - - - - - - - -ctcacat
- - - - - - - - - - - - - - - - - - - - cactccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca