1 5' 3' | 2 5' 3' |
...tgatgcagaacaaactttgtgttgttttcccattgaatttgatatcatttttatttgctttagatttatcaattcaacattttttcttccctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCA
species | Glycine max |
transcript | GLYMA20G32920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATG ATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCAEST: gi|298178110|gb|HO027493.1|HO027493
genomic: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATGgtgaacattt ... ctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCA
EST: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATG ATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAEST: gi|151406688|gb|EV276503.1|EV276503
genomic: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATGgtgaacattt ... ctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTA
EST: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATG ATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCA
genomic: ATACTGCGAGGAGATCTTTTCCTATTGCATCCAGATCCAATCTCAGCATGgtgaacattt ... ctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCA
catttttatttgctttagatttatcaattcaacattttttcttccctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCA
cattttttcttccctg CT-rich tract
tttagatttatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgcagaacaaactttgtgttgttttcccattgaatttgatatcatttttatttgctttagatttatcaattcaacattttttcttccctgtgttcagATGGAGCGGGGTTGCCATGGTCTTGAACGTGTGACTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTTTTTTGCTGCAGCAGAAAATTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
tgatgca
- - - - - - - ctttgtg
- - - - - - - - - - - - -tttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca