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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatagcatgagttttattcaaatcttaatactggattatttttcaatcaatgtaaatagttatatgattataaaatttagGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGGCGTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTT

Basic information

species Glycine max
transcript GLYMA20G32690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32690.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtggatagcatgagttttattcaa--atcttaatactggattatttttcaatcaatgtaaatagttatatgattataaaatttagGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGGCGTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTT
                    |  |||  |  | |||| || |   |||  || |    |  |   || |     |     |  || | |  || |||||   |||||| ||||||||||||||| |  |||||||||| |||| || ||||||||| ||||||||||| | ||||||||||||||| |||  |||| | | |||
cttttggtgtccctctttactatata-tactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaa---agGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408398|gb|EV278206.1|EV278206
EST:     TCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCAG                         GTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGG
genomic: TCTTGAAGTGGATGATGGGATTTGTTATACTCATCCTCAACATTTACCAGgtggatagca ... taaaatttagGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatactggattatttttcaatcaatgtaaatagttatatgattataaaatttagGTGTCAAGCAAGATGGAAGTTCTTCTCACTTTTTCCATCGAGTAATCAAGGCGTATAATACTGGCAGTCGAAAGCGTCGAAAAATATGTGGTCAGGATTT
 tcttaat  putative branch site (score: 3)
         attatttttcaatcaa  TA-rich tract