1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgtttaaacatatactagttcaaaacttcattcttttgtccccaagtattacatttatagttgtaggtgttctcttacatttgaaacttcatgctgttagGTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCTGATCAAGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATT
species | Glycine max |
transcript | GLYMA20G32690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGAT GTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCT
genomic: ATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtat ... atgctgttagGTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCT
gtattacatttatagttgtaggtgttctcttacatttgaaacttcatgctgttagGTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCTGATCAAGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATT
ctcttac putative branch site (score: 3)
atttatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttaaacatatactagttcaaaacttcattcttttgtccccaagtattacatttatagttgtaggtgttctcttacatttgaaacttcatgctgttagGTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCTGATCAAGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGCTGGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - catatac
- - - - - - - - - -tcaaaac
- - - - - - - - - - - - - ttcattc
- - - - - - - - - - - - - - - - - - tgtcccc