Sequence
atgc intronic sequence ATGC exonic sequenceCAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtatctttttaatctagcttttttgtttcagagtatatttcataggaacattttttcttcacagatatagatattgcaattgtgcatgtaaggt...
Basic information
species | Glycine max |
transcript | GLYMA20G32690.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32690.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G25580.1 (Arabidopsis thaliana), 5'ss of exon 2
---CAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtatctttttaatctagcttttttgtttcagagtatatttcataggaacattttttcttcacagatatagatattgcaattgtgcatgtaaggt
| | | | || | | | | |||| | ||||| ||||| || || ||| ||| || | ||||| ||||| ||||||||||||||||||||| | ||| | | ||| ||| | || | ||| || || | | | | | | | || | | | ||
TATGAGTGCATCGGCTAGTTCCGATCC---TCGCCAAGTGGTGTGGAAGAGCAACCCGTCAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATgtatgtctgctctttcgtttca--tttgatgtctagtctctcatattatatttctatgttgttgttgtaaacacaagttttttacatttccag-------
upper sequence: GLYMA20G32690.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02990.t01 (Vitis vinifera), 5'ss of exon 2
CAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatg--tgtatctttttaatctagct--tttttgtttcag---agtatatt--tcataggaacattttttcttcacagatatagatattgcaattgtgcatgtaaggt
||| | || | || | || | ||| | |||||||||||||||| ||||||||||||| || || ||| | |||||||| |||||||||| | || | | || | ||| || || | | | | ||| |||| ||| || || ||| || || | || | |
CAAGAATGCATCTGGCACTCGTGAGACTGAAAGAGTCAAATGGAAAAGCAATCCTAGTAGAGCTTGCCCAAATTGCCAGCATATAATTGACAATAGTGATgtataatcccaactcccttacgcttctgatccttgattaagtgaaagagactactcagaggagatccatttatttgttgaaataaatgttagatttattc---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151408398|gb|EV278206.1|EV278206EST: ATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGAT GTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCT
genomic: ATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtat ... atgctgttagGTAGCACAAGAATGGCCTGGACTACCTATTGGTGTTAAATTTGATCCATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAATAAAGAGTGCCTCTGGAACATGTGGTAAAGTTATATGGAAAAGCAATCCTTCCAGAGCTTGCCCAAGCTGTCACCATGTTATTGACAACAGTGATgtatgtgtatctttttaatctagcttttttgtttcagagtatatttcataggaacattttttcttcacagatatagatattgcaattgtgcatgtaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG