Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGCATCTGAACTTGAAATATTATCTGGACCCAAGAAGGAACCGACCAGAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaaggctctttggttatgatatcactcttctacatccctcataaactaaaaatgattttgcatagaaaaactaggctagctgaagtgtagcaa...
Basic information
species | Glycine max |
transcript | GLYMA20G32630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G32630.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
TGTTGCATCTGAACTTGAAATATTATCTGGACCCAAGAAGGAACCGACCAGAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaaggctc---tttggttatgata-tcactcttctacatccctcataaactaaaaatgattttgcatagaaaaactaggctagctgaagtgtagcaa---------------------------------------------------------------------------------------------
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TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcgtttctgcatctgtttctgttaatttatacttcacatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
upper sequence: GLYMA20G32630.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S53_66V6.1 (Physcomitrella patens), 5'ss of exon 7
---TGTTGCATCTGAACTTGAAATATTATCTGGACCCAAGAAGGAACCGACCAGAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaaggc-----tctttggttatgatatcactcttctacatccctcataaactaaaaatgattttgcatagaaaaactaggctagctgaagtgtagcaa
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ACGGGTTGCATCACAACTTAA---CCAAACTCTCCCCATCAAGGAGACTGTGCGTGAGTTTTTGTTGCTGCAGGGTGTTCGGTTTGCATTTCGTGTTCATCAGgtaattttttgccctaaattgatggttatagtgtcgaa-ttctgaattaaaatcaaagtatccaattcgtcgaagagaaggtgcaagtgtccaacgctgtg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13311359|gb|BG405010.1|BG405010EST: GAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAG TTTGCAGGAGGCTTTGATACGGAGAGCATGAAAGTTTTTGAAGAACTA
genomic: GAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaa ... ctcttttcagTTTGCAGGAGGCTTTGATACGGAGAGCATGAAAGTTTTTGAAGAACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGCATCTGAACTTGAAATATTATCTGGACCCAAGAAGGAACCGACCAGAGAGTTTTTGATTCTGCAAGGAGTGCATTTTGCTTTTCGTGTTCATCAGgtaattttaaggctctttggttatgatatcactcttctacatccctcataaactaaaaatgattttgcatagaaaaactaggctagctgaagtgtagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catccctc