1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAGAACGCGGTGAAGCAAGGATTAGAAACGATCAAGATGAGGCTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAGgtattcagctgaagttattgattttttttatttttttttttatgagggttatgaggatttcttttgcataattgttttgcctttttgtcctcatatgaatgaaaaaaatgggaatttttatttatgtttgcgacatgatttgacactggtgcag
species | Glycine max |
transcript | GLYMA20G32630.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAG AGGGAAGAGGAAGAGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAATEST: gi|151411736|gb|EV281547.1|EV281547
genomic: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAGgtattcagct ... actggtgcagAGGGAAGAGGAAGAGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAAT
EST: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAG AGGGAAGAGGAAGAGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAATEST: gi|208282266|gb|GE074190.1|GE074190
genomic: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAGgtattcagct ... actggtgcagAGGGAAGAGGAAGAGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAAT
EST: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAG AGGGAAGAGGAAGAAGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAA
genomic: CTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAGgtattcagct ... actggtgcagAGGGAAGAGGAAG-AGCAAGAGGAGGTTAAGCTAATCAACAGCATAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAACGCGGTGAAGCAAGGATTAGAAACGATCAAGATGAGGCTACAGAAGAGGCGCAGGTCACTTGTTCTATTGATGGTCACACCGAGAAGgtattcagctgaagttattgattttttttatttttttttttatgagggttatgaggatttcttttgcataattgttttgcctttttgtcctcatatgaatgaaaaaaatgggaatttttatttatgtttgcgacatgatttgacactggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG