1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtgtatgcgttccttgctattctctatagatatagcatgaactcatgaagcttatttatcaattcatctatttccatcttgctctatttttacttccagAGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATATGGCTATTTCAAGGTACAAAGAGTTTGGAATACCAGTAACTTGGCTATTAGATACAGGA
species | Glycine max |
transcript | GLYMA20G32630.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAACTCCCATGTCAAACTGCTTTGCAGAAAATGTACTCGTTGCTTGAAAA AGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATEST: gi|13311359|gb|BG405010.1|BG405010
genomic: AAACTCCCATGTCAAACTGCTTTGCAGAAAATGTACTCGTTGCTTGAAAAgtaagcatca ... ttacttccagAGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGAT
EST: AAACTCCCATGTCAAACTGCTTTGCAGAAAATGTACTCGTTGCTTGAAAA AGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATATGGCTATTTC
genomic: AAACTCCCATGTCAAACTGCTTTGCAGAAAATGTACTCGTTGCTTGAAAAgtaagcatca ... ttacttccagAGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATATGGCTATTTC
atgaagcttatttatcaattcatctatttccatcttgctctatttttacttccagAGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATATGGCTATTTCAAGGTACAAAGAGTTTGGAATACCAGTAACTTGGCTATTAGATACAGGA
tttccatcttgctcta CT-rich tract
ttatttatcaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgtatgcgttccttgctattctctatagatatagcatgaactcatgaagcttatttatcaattcatctatttccatcttgctctatttttacttccagAGTGGAGCAAAGCATATATGCACTCTTACGGACAAGAGATATGGCTATTTCAAGGTACAAAGAGTTTGGAATACCAGTAACTTGGCTATTAGATACAGGA
- tgtatgc
- - - - - - ccttgct
- - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - ctcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca