Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGGTGCGAATCACATTAGGACATGGAGGAGTGACAGTTTAGCATCTGCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccacacctaaactaaactaacctcactacgtgctcttaattttatattttatttttatctctaaatctaagtttcttagaatactaccaaaagag...

Basic information

species Glycine max
transcript GLYMA20G32550.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166004|gb|HO008975.1|HO008975
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCATAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163926352|gb|EH038458.1|EH038458
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|151397159|gb|EV267032.1|EV267032
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298165077|gb|HO011126.1|HO011126
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGTAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163927213|gb|EH040128.1|EH040128
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163928813|gb|EH038613.1|EH038613
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298176358|gb|HO023059.1|HO023059
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298195429|gb|HO039260.1|HO039260
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298197394|gb|HO044873.1|HO044873
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298166112|gb|HO009083.1|HO009083
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298199454|gb|HO042817.1|HO042817
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCT
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCT
EST: gi|298190378|gb|HO032499.1|HO032499
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|298183590|gb|HO028803.1|HO028803
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163926938|gb|EH039338.1|EH039338
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCGTTTGG                         GTTGGCCTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163921493|gb|EH039811.1|EH039811
EST:     GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGA                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
EST: gi|163926168|gb|EH039137.1|EH039137
EST:     GCAGGGGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGG                         GTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG
genomic: GCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccaca ... aatgaaacagGTTGGCTTGCAAGCAAATAAACATAGGAGGGCACAGAGGGTGGAGGCTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGGGTGCGAATCACATTAGGACATGGAGGAGTGACAGTTTAGCATCTGCAGGAGCCACATCAATCGTTGCTTGGGCAGTCACTGCTCTAGCATTTGGgtaaaccacacctaaactaaactaacctcactacgtgctcttaattttatattttatttttatctctaaatctaagtttcttagaatactaccaaaagag

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