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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCATTGCTGTTTCTTAACTTGATCATGTATTTTATTGTTCTTGGCTTTGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttatacacttcctatatccatttctataccattttccatctactattttgtcaatttgttatcatttgattgattgattgatcttcatgttaca...

Basic information

species Glycine max
transcript GLYMA20G32550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0049g02240.t01 (Vitis vinifera), 5'ss of exon 1
GCTCCATTGCTGTTTCTTAACTTGATCATGTATTTTATTGTTCTTGGCTTTGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaag---cttatacacttcctatatccatt-tcta--taccattttccatctactattttgtcaatttgttatcatttgattgattgattgatcttcatgttaca-----------------------------------------------
|||||  | || || || ||||||||  ||||| || ||||  | || |||| ||||||||||||||||| ||| ||||||||||| ||  || ||||| || ||   || | | |    |  | || | | || |  | |||| ||   | | |   ||||||  |  | ||      ||           |   | | |  |||                                               
GCTCCTCTACTCTTCCTCAACTTGATATTGTATATTCTTGTGGTGGGTTTTGGTAGTTGGTGCCTCAACAGGTTGATCAATGGCCAGACCAACAACCCTGgttagtagctcacaaatcctccctctcaactctccaacttccatattttttttccctctttgtctctgggctaaggagcgaggagcatcaaaagtctaaagaaacagaagcatatatatatatatactttttgtgttttttctttctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166004|gb|HO008975.1|HO008975
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163926352|gb|EH038458.1|EH038458
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|151397159|gb|EV267032.1|EV267032
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCTTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298165077|gb|HO011126.1|HO011126
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163927213|gb|EH040128.1|EH040128
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163926170|gb|EH039139.1|EH039139
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298176358|gb|HO023059.1|HO023059
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298195429|gb|HO039260.1|HO039260
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298197394|gb|HO044873.1|HO044873
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298166112|gb|HO009083.1|HO009083
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298199454|gb|HO042817.1|HO042817
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298190378|gb|HO032499.1|HO032499
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|298183590|gb|HO028803.1|HO028803
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGACCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163926938|gb|EH039338.1|EH039338
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163921493|gb|EH039811.1|EH039811
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCCTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
EST: gi|163926168|gb|EH039137.1|EH039137
EST:     TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTA                         GCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG
genomic: TGCTAGTTGGTGCCTCAACAAGTTCATCAATGGCCAAACTTACCACCCTAgtaagcttat ... gtcctttcagGCTTTGGTGGAAATGGTGCAACTATGTTTTTCTTAATCTTCTCCATACTAG