1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag
species | Glycine max |
transcript | GLYMA20G32530.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192295767|gb|FG990847.1|FG990847
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|151399368|gb|EV269239.1|EV269239
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|298189311|gb|HO037714.1|HO037714
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192307320|gb|FK002384.1|FK002384
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|298192825|gb|HO033259.1|HO033259
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCEST: gi|192323408|gb|FK018999.1|FK018999
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGC
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192313756|gb|FK007320.1|FK007320
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192313755|gb|FK007319.1|FK007319
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTC
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA