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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accaaataaaccctaaatttcaatgaaattactttagaatactcattaaatgaaattattttatcttgtaaactgctttcctctttcttcatcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG

Basic information

species Glycine max
transcript GLYMA20G32530.5
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325133|gb|FK017519.1|FK017519
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|192295767|gb|FG990847.1|FG990847
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|151399368|gb|EV269239.1|EV269239
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|298189311|gb|HO037714.1|HO037714
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|192307320|gb|FK002384.1|FK002384
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|151402040|gb|EV271853.1|EV271853
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|298192825|gb|HO033259.1|HO033259
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|10231625|gb|BE800513.1|BE800513
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|298167095|gb|HO010534.1|HO010534
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCT
EST: gi|192323408|gb|FK018999.1|FK018999
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGGAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|192313756|gb|FK007320.1|FK007320
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|17023121|gb|BM094155.1|BM094155
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|192313755|gb|FK007319.1|FK007319
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|26058176|gb|CA801090.1|CA801090
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACCAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
EST: gi|208278463|gb|GE077108.1|GE077108
EST:     GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCT                         GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT
genomic: GTGAAAATACTTTTGTGGACTCCAAGAAATCTGAGCTGCCTGGATATGCTgtaagttttt ... atcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatgaaattattttatcttgtaaactgctttcctctttcttcatcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG
                           ctgctttcctctttct  CT-rich tract
     tgaaattattttatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accaaataaaccctaaatttcaatgaaattactttagaatactcattaaatgaaattattttatcttgtaaactgctttcctctttcttcatcatgacagGTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG