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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTGTTCCTTTTCTAAACCCAACACAACATCGTGTCCTTTTCTTCTCTTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctcttctcaccctttttcctttctttctttttctttccaaaatatcccaacttttaaaaaataatgccgtgtttgccttctaagaattactgg...

Basic information

species Glycine max
transcript GLYMA20G32530.5
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325133|gb|FK017519.1|FK017519
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|192295767|gb|FG990847.1|FG990847
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|151399368|gb|EV269239.1|EV269239
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|298189311|gb|HO037714.1|HO037714
EST:     GATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: GATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|192307320|gb|FK002384.1|FK002384
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|151402040|gb|EV271853.1|EV271853
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCCACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|208080337|gb|GD877141.1|GD877141
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGACCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|298192825|gb|HO033259.1|HO033259
EST:     CCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: CCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|10231625|gb|BE800513.1|BE800513
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|298167095|gb|HO010534.1|HO010534
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|192323408|gb|FK018999.1|FK018999
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|192313756|gb|FK007320.1|FK007320
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|17023121|gb|BM094155.1|BM094155
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|208174493|gb|GD971730.1|GD971730
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|192313755|gb|FK007319.1|FK007319
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
EST: gi|26058176|gb|CA801090.1|CA801090
EST:     TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAG                         GTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA
genomic: TTCGATCCACTACGTGCCTGATCCTCTGCTTCAGGCACATACTCCCGCAGgttctacctc ... tggatattagGTTAAATGGCGAGGATCAAACCTCAGGCTCTGCTACAGCAAAGCAAAAGGA