1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag
species | Glycine max |
transcript | GLYMA20G32530.4 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|21256354|gb|BQ453242.1|BQ453242
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192295767|gb|FG990847.1|FG990847
genomic: GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|298189311|gb|HO037714.1|HO037714
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|11274928|gb|BF325253.1|BF325253
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192307320|gb|FK002384.1|FK002384
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|254319054|gb|GR830510.1|GR830510
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|298192825|gb|HO033259.1|HO033259
genomic: GAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCEST: gi|151399368|gb|EV269239.1|EV269239
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGC
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|7640495|gb|AW734796.1|AW734796
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192313756|gb|FK007320.1|FK007320
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192313755|gb|FK007319.1|FK007319
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCEST: gi|7591047|gb|AW706788.1|AW706788
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTC
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAAEST: gi|192323408|gb|FK018999.1|FK018999
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAGTAATTAAGCACTATGTGATTCAGGCAGGGGATAACCAAGGATCTGGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA