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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttattcttctagtttttgcagtttaattttctgacatattcatacataatgacagtaatgatcataattttctaattgatggacattgtgattattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAACAAAGGATTTGATCTTTTCATTACAACTGCACCGATACCAGATTTAAAT

Basic information

species Glycine max
transcript GLYMA20G32530.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325133|gb|FK017519.1|FK017519
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|21256354|gb|BQ453242.1|BQ453242
EST:     GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|192295767|gb|FG990847.1|FG990847
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|298189311|gb|HO037714.1|HO037714
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|11274928|gb|BF325253.1|BF325253
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|192307320|gb|FK002384.1|FK002384
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|254319054|gb|GR830510.1|GR830510
EST:     GAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|298192825|gb|HO033259.1|HO033259
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGC
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGC
EST: gi|151399368|gb|EV269239.1|EV269239
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|7640495|gb|AW734796.1|AW734796
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|192313756|gb|FK007320.1|FK007320
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|192313755|gb|FK007319.1|FK007319
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTC
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTC
EST: gi|7591047|gb|AW706788.1|AW706788
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
EST: gi|192323408|gb|FK018999.1|FK018999
EST:     GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAG                         TATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA
genomic: GGAGCTACTGAAGATTGGAACTTGAGAGGAAAGCAACATACAATTACTAGgttttcttat ... tattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgacagtaatgatcataattttctaattgatggacattgtgattattaactagTATGAAACATGAAGCATTCATGCTTGGAACTTCCAAGGGCAAACACAACAACAAAGGATTTGATCTTTTCATTACAACTGCACCGATACCAGATTTAAAT
        taatgatcataatttt  TA-rich tract