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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtacttgtttttcctatgaaattataatttgaaggctgttagatggtttagggtttgattcttggagactctatttttgtttggacttgtggctgg...

Basic information

species Glycine max
transcript GLYMA20G32530.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325133|gb|FK017519.1|FK017519
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCAT-GACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|192295767|gb|FG990847.1|FG990847
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|298189311|gb|HO037714.1|HO037714
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|11274928|gb|BF325253.1|BF325253
EST:     GGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: GGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|192307320|gb|FK002384.1|FK002384
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|151402040|gb|EV271853.1|EV271853
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|298192825|gb|HO033259.1|HO033259
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|10231625|gb|BE800513.1|BE800513
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCANAAAGGACACTTCAAGGGGATGCTNTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|151399368|gb|EV269239.1|EV269239
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|192313756|gb|FK007320.1|FK007320
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|208266975|gb|GE062342.1|GE062342
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|17023121|gb|BM094155.1|BM094155
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|192313755|gb|FK007319.1|FK007319
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|26058176|gb|CA801090.1|CA801090
EST:     CTGTACCAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         GCAAAAAGGACACTTCCAGGGG
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGG
EST: gi|208278463|gb|GE077108.1|GE077108
EST:     CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
EST: gi|192323408|gb|FK018999.1|FK018999
EST:     CTGTACAAGGGAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATG                         TCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA
genomic: CTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtactt ... tttcttgcagTCAAAAAGGACACTTCAAGGGGATGCTTTTTCACAAAGTAATTAAGCACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTAAATACCTCTAAAGGTTCTATAATAATAGAACTGTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGgtgagtacttgtttttcctatgaaattataatttgaaggctgttagatggtttagggtttgattcttggagactctatttttgtttggacttgtggctgg

- - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG