1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggtaagttaaaattatagtcatagtatttttagagtccgatcatatatgttttatagttatgctgaaattagaatttcttcttttctttaatattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGCATGACATCAAGGCTCATCAGATTTTATATGATGAATTTGTGGAGCACT
species | Glycine max |
transcript | GLYMA20G32200.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCAATGATTAG GTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGEST: gi|51341491|gb|CO982808.1|CO982808
genomic: AGCAATGATTAGgtaatatgtt ... atattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGG
EST: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAG GTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGEST: gi|7795150|gb|AW780547.1|AW780547
genomic: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAGgtaatatgtt ... atattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGG
EST: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAG GTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGEST: gi|16348975|gb|BI974570.1|BI974570
genomic: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAGgtaatatgtt ... atattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGG
EST: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAG GTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGG
genomic: GTGACATTATTTGGAAATGATTTACACACAGTTACTCAAGCAATGATTAGgtaatatgtt ... atattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGG
tatgttttatagttatgctgaaattagaatttcttcttttctttaatattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGCATGACATCAAGGCTCATCAGATTTTATATGATGAATTTGTGGAGCACT
ctttaat putative branch site (score: 4)
tttcttcttttcttta CT-rich tract
aaattagaatttcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaagttaaaattatagtcatagtatttttagagtccgatcatatatgttttatagttatgctgaaattagaatttcttcttttctttaatattgttagGTTAAATTTAGTAATTTGCTGAAGTTGGTAGTTGAAACCATAGACACATGGCATGACATCAAGGCTCATCAGATTTTATATGATGAATTTGTGGAGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa