1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gatgcttttcttaggcaatttgtgcttttgacttttgagacatctattgagtatttaataacacatttttttatggttattgcctttttttaattgtcagTGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGGTTTCTGGGACTAAGAGGAAGTATTACATGCTAGGTGGGAAAGGGGGAGT
species | Glycine max |
transcript | GLYMA20G32200.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTTCCTTTTCTGCTTCCTCTTAAATCCCCCACTAAGTCTTTTCAAG TGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGGEST: gi|7692844|gb|AW760943.1|AW760943
genomic: TTTCTTTCCTTTTCTGCTTCCAC-TAAATCCCCCACTAAGTCTTTTCAAGgtttcaaact ... taattgtcagTGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGG
EST: CTTTCTTTCCTTTTCTGCTTCCACTAAATCCCCCACTAAGTCTTTTCAAG TGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGG
genomic: CTTTCTTTCCTTTTCTGCTTCCACTAAATCCCCCACTAAGTCTTTTCAAGgtttcaaact ... taattgtcagTGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGG
attgagtatttaataacacatttttttatggttattgcctttttttaattgtcagTGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGGTTTCTGGGACTAAGAGGAAGTATTACATGCTAGGTGGGAAAGGGGGAGT
ttattgccttttttt CT-rich tract
tatttaataacacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcttttcttaggcaatttgtgcttttgacttttgagacatctattgagtatttaataacacatttttttatggttattgcctttttttaattgtcagTGAGATCAATTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGGTTTCTGGGACTAAGAGGAAGTATTACATGCTAGGTGGGAAAGGGGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
gatgctt
- - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacat