1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa...
species | Glycine max |
transcript | GLYMA20G32200.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAG GATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGCEST: gi|7795150|gb|AW780547.1|AW780547
genomic: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaat ... aacttttcagGATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
EST: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAG GATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGCEST: gi|16348975|gb|BI974570.1|BI974570
genomic: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaat ... aacttttcagGATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
EST: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAG GATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGCEST: gi|193404452|gb|FK365361.1|FK365361
genomic: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaat ... aacttttcagGATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
EST: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAG GATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
genomic: TTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaat ... aacttttcagGATCAAATGCGTGCTCTTGATATAGTTCAGAACGATCCAGAACTCTCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCCTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCATCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGgtactttaattgttttctcttttatttttgcatggattgtatctgagtggttaactataatgtaattcattttgaactgatagctgagcataccaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA