Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattgctatattgttaatatttctatatctaaattcacaactaagataagtcaagttttcaactaaaaaaagttgtagctttatctgatttattgttctctttgtgtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCAGCCAAGGCCCTTGGATCATTCA

Basic information

species Glycine max
transcript GLYMA20G32000.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053458|gb|BM732125.1|BM732125
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|193486992|gb|FK450489.1|FK450489
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGG
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGG
EST: gi|9204321|gb|BE330545.1|BE330545
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|10848293|gb|BF071701.1|BF071701
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|14011870|gb|BG726792.1|BG726792
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|21600361|gb|BQ610692.1|BQ610692
EST:     GGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|17153112|gb|BM143045.1|BM143045
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAAGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|16348680|gb|BI974266.1|BI974266
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7590775|gb|AW706447.1|AW706447
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|18041138|gb|BM309432.1|BM309432
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAAGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|5126818|gb|AI748554.1|AI748554
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7232323|gb|AW567680.1|AW567680
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|12774252|gb|BG239179.1|BG239179
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|9439806|gb|BE440320.1|BE440320
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGCATCTTNTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|193443322|gb|FK407430.1|FK407430
EST:     TGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: TGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|21888838|gb|BQ742051.1|BQ742051
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC
EST: gi|20813765|gb|BQ298243.1|BQ298243
EST:     GTCTTGTATTTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCAT                         TGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCCTTCTAC
genomic: GTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGCCATGGGATGACCATgtgagtattg ... gtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaaaaaaagttgtagctttatctgatttattgttctctttgtgtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCAGCCAAGGCCCTTGGATCATTCA
                   tttatctgatttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtattgctatattgttaatatttctatatctaaattcacaactaagataagtcaagttttcaactaaaaaaagttgtagctttatctgatttattgttctctttgtgtgtggttagTGGATCTTTTGGGTAGGACCATTTATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCAGCCAAGGCCCTTGGATCATTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG