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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTGTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaaaatcatttttcttattattagtttctgtttctgattctgttgccttgctttagttggtggtatgaataataagaatgtaatgaactgtag...

Basic information

species Glycine max
transcript GLYMA20G32000.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053458|gb|BM732125.1|BM732125
EST:     CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: CTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|193486992|gb|FK450489.1|FK450489
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|9204321|gb|BE330545.1|BE330545
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTAGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|10848293|gb|BF071701.1|BF071701
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|14011870|gb|BG726792.1|BG726792
EST:     GGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: GGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|17153112|gb|BM143045.1|BM143045
EST:     TCTTCTCTGCCACTGACCCTAAGAGAAAT-CTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|16348680|gb|BI974266.1|BI974266
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|192334592|gb|FK025181.1|FK025181
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGAT-CCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|193354978|gb|FK320795.1|FK320795
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|18041138|gb|BM309432.1|BM309432
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|13787332|gb|BG649924.1|BG649924
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|31468344|gb|CD410372.1|CD410372
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|7232323|gb|AW567680.1|AW567680
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|9439806|gb|BE440320.1|BE440320
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|15813569|gb|BI785844.1|BI785844
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|22525086|gb|BU083897.1|BU083897
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|16345993|gb|BI971579.1|BI971579
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|193401135|gb|FK370134.1|FK370134
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|33389560|gb|CA852767.1|CA852767
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|308099117|gb|HO760958.1|HO760958
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|7690987|gb|AW759122.1|AW759122
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|7146157|gb|AW508142.1|AW508142
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTAGCTGTGTTCAT
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCAT
EST: gi|21888838|gb|BQ742051.1|BQ742051
EST:     TCTTCTCTGCCACTGACCCTAAGATTT-TGTTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|16346559|gb|BI972154.1|BI972154
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|20813765|gb|BQ298243.1|BQ298243
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
EST: gi|18039862|gb|BM308156.1|BM308156
EST:     TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCG                         GTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC
genomic: TCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaa ... tctgtattagGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTGGATTGGGTGCTGAGATCATTGGCACCTTTGTTTTGGTGTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCTAGAGATTCCCATGTTCCGgtaagttcaaaatcatttttcttattattagtttctgtttctgattctgttgccttgctttagttggtggtatgaataataagaatgtaatgaactgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg