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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATGCTGATGCGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttctttcagatccctccctttgcttctaaaaagtatcttgtcatttgtcatgtttgctgcatgttttgcaagttctcatctttttgcactttt...

Basic information

species Glycine max
transcript GLYMA20G32000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21676761|gb|BQ629112.1|BQ629112
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGC
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGC
EST: gi|19452789|gb|BM954208.1|BM954208
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|5666610|gb|AI930646.1|AI930646
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|21601223|gb|BQ611554.1|BQ611554
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATNTTGGGCTGTTTTTGGCTCGCAAG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACAT-TTGGGCTGTTTTTGGCTCGCAAG
EST: gi|193566088|gb|FK526383.1|FK526383
EST:     TCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGAAATTTGGGCNGTTTTTGGCTCGCAAGG
genomic: TCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|24136831|gb|BU927341.1|BU927341
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|192334592|gb|FK025181.1|FK025181
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|26269348|gb|CA820411.1|CA820411
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|18041138|gb|BM309432.1|BM309432
EST:     CTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|6724348|gb|AW308747.1|AW308747
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGNGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|18039721|gb|BM308015.1|BM308015
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|16346441|gb|BI972036.1|BI972036
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|21601993|gb|BQ612324.1|BQ612324
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|18039862|gb|BM308156.1|BM308156
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
EST: gi|19937790|gb|BQ081422.1|BQ081422
EST:     CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAG                         GAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG
genomic: CTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttc ... tggtttgcagGAGGTCACATTAACCCAGCAGTGACATTTGGGCTGTTTTTGGCTCGCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCATGCTGATGCGTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACTGCTGGGATTTCAGgtttgctttctttcagatccctccctttgcttctaaaaagtatcttgtcatttgtcatgtttgctgcatgttttgcaagttctcatctttttgcactttt

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc