1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattcaatatgtatagtgctcttgtagtgtagagcaatgtagatttttgttgaattgcatattattttaattgggtctatgcatggaaaatgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAGCTGATTGATAAAATTCCAAAGCGAGATCAATTAGTTTCCACGTCATAG
species | Glycine max |
transcript | GLYMA20G31920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAEST: gi|208137624|gb|GD936328.1|GD936328
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAEST: gi|8285774|gb|BE023333.1|BE023333
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAAEST: gi|254328855|gb|GR833227.1|GR833227
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAA
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAEST: gi|31307478|gb|CD392681.1|CD392681
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAEST: gi|37996736|gb|CF808325.1|CF808325
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
EST: GNAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGEST: gi|21637783|gb|BM107938.1|BM107938
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATG
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGANAAGCTCTTGAAAEST: gi|254328856|gb|GR833228.1|GR833228
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
EST: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAG ATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
genomic: GGAGAGTCCTCTAAACAGCTATGCTGCAGCACTTTGGAATGACAAGGAAGgtgtggaaaa ... tgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAA
tttgttgaattgcatattattttaattgggtctatgcatggaaaatgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAGCTGATTGATAAAATTCCAAAGCGAGATCAATTAGTTTCCACGTCATAG
ttttaat putative branch site (score: 3)
tgaattgcatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcaatatgtatagtgctcttgtagtgtagagcaatgtagatttttgttgaattgcatattattttaattgggtctatgcatggaaaatgtcatgcagATTACAGGAGAATGGTTCACAAACAGTATTTTGCTCGAGAAGCTCTTGAAAGCTGATTGATAAAATTCCAAAGCGAGATCAATTAGTTTCCACGTCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA