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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGACTATCCTTTTAAGGCCCCCCAAGTGAAGTTTGAGACAATGTGCTTTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatgaacttatgaattagagccaaattttcaatgatctgtgttttggtggctttggatctctaccatttagttttactatggatgcttaagtata...

Basic information

species Glycine max
transcript GLYMA20G31920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g04090.t01 (Vitis vinifera), 5'ss of exon 3
CCTAGACTATCCTTTTAAGGCCCCCCAAGTGAAGTTTGAGACAATGTGCTTTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatgaacttatgaa-----ttagagc--caaattttcaatgatctgtgttttggtggctttggatctctaccatttagttttactatggatgcttaagtata
||| ||||| ||||| ||| | |||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||   | |||||   |      || ||    |||||||    |||       | |  |||   |  || | |   |   |  | | || || |   | ||     
CCTTGACTACCCTTTCAAGCCACCCCAAGTTAAGTTTGAAACAATGTGCTTCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactcaacttgctagaagtttttgaattgcaaatttctggtgactaacaatctaatggtcctatatttatgata---acctctgctttgaaaattgaat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731740|gb|BU764010.1|BU764010
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|8285774|gb|BE023333.1|BE023333
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|254328855|gb|GR833227.1|GR833227
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|31307478|gb|CD392681.1|CD392681
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCA-                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|37996736|gb|CF808325.1|CF808325
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|21637783|gb|BM107938.1|BM107938
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|254328856|gb|GR833228.1|GR833228
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAA
EST: gi|298170339|gb|HO018963.1|HO018963
EST:     TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGGCATCCTTCAG                         GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTA
genomic: TTCATCCAAATATTGACCAGTTTGGCAACATTTGTCTGGACATCCTTCAGgtattcatga ... gtttctacagGACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTA