Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAATGTCCTTCCCTGAAATAATTTCTAAGCTGCCAGAGATTGGAAGGCGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgttgttcatttgatcttttattattttttttttcatttcttccctctcatattcctttatcttgaaacaaataagcagaaaagtatttggtgttttaagcttctctagtaccttcccttagcaatcatataatagttattttcctttcaagctcatgctacctttgataatgcag

Basic information

species Glycine max
transcript GLYMA20G31800.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g01270.1 (Oryza sativa), 5'ss of exon 4
CAACAATGTCCTTCCCTGAAATAATTTCTAAGCTGCCAGAGATTGGAAGGCGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgtt---gttcatttgatcttttattattttttttttcattt---cttccctctcatattcctttatcttgaaacaaataagcagaaaagtatttggtgttttaagcttctctagtaccttcccttagcaatcatataatagttattttcctttcaagctcatgctacctttgataatgcag
|  |  | || || || ||  | || || |  || ||| | |||||    || ||  | ||  |||| |||||||| ||||||||||| ||||||||||||||   ||  |||     |||||  |      |||  || |   || |    ||| || |    || |  |                                                                                                              
CTTCGCTTTCATTTCCAGATCTCATATCAACACTTCCACAAATTGGGCTCCGAGGACTTTATCGGGGTTCTATCCCCGCAATTCTTGGTCAGTTTTCAAGgttagtgtcaattcagagttttag-aggcaaatttgaatgtaggctgcaaattcacatcctgccatttgcag-------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g01240.1 (Oryza sativa), 5'ss of exon 4
CAACAATGTCCTTCCCTGAAATAATTTCTAAGCTGCCAGAGATTGGAAGGCGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgtt---gttcatttgatcttttattattttttttttcattt---cttccctctcatattcctttatcttgaaacaaataagcagaaaagtatttggtgttttaagcttctctagtaccttcccttagcaatcatataatagttattttcctttcaagctcatgctacctttgataatgcag
|  |  | || || |||||  | || || |  || ||| | |||||    || ||  | ||  |||| |||||||| ||||||||||| ||||||||||||||   ||  |||     |||||  |      |||  || |   || |    ||| || |    || |  |                                                                                                              
CTTCTCTTTCTTTTCCTGATCTCATATCAACACTTCCACAAATTGGGCTCCGAGGACTTTATCGGGGTTCTATCCCCGCAATTCTTGGTCAGTTTTCAAGgttagtgtcgattcagagttttag-aggcaaatttgaatgtaggctgcatattcacatcctgccatttgcag-------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 4
CAACAATGTCCTTCCCTGAAATAATTTCTAAGCTGCCAGAGATTGGAAGGCGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgttgttcatttgatcttttattattttttttttcatttcttccctctcatattcctttatcttgaaacaaataagcagaaaagtatttggtgttttaagcttctctagtaccttcccttagcaatcatataatagttattttcctttcaagctcatgctacctttgataatgcag
||||| | || ||||| ||||| ||| | ||||| ||||| |||||      ||| ||||| ||||| ||| ||||||||||||||||||||||||| ||||| |  || |||  || |     |  |  |||   || | |    |    || |   |   ||||  ||| |||    ||||||     |   ||    |||| |  |||                                                                
CAACACTCTCATTCCCAGAAATCATTGCAAAGCTTCCAGAAATTGGCGCCAAGGGATTATATAGGGGTTCTGTCCCTGCAATTCTTGGACAGTTTTCGAGgttat--atgtgaatttct-----tactccttttgcttgtacttagttgagttgc---aagatgaagtaaaaaag---gaaagtaaacaataggttgcatttctttcctactg--------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285853|gb|BI469744.1|BI469744
EST:     CGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAG                         CCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA
genomic: CGGGGTTTATACAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgttgttcatt ... gataatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA
EST: gi|13478155|gb|BG507751.1|BG507751
EST:     CAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAG                         CCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA
genomic: CAGGGGCTCTATCCCTGCAATTCTTGGACAGTTTTCAAGgttgttcatt ... gataatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA
EST: gi|17519837|gb|BM188879.1|BM188879
EST:     TTGGACAGTTTTCAAG                         CCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA
genomic: TTGGACAGTTTTCAAGgttgttcatt ... gataatgcagCCATGGCTTGCGAACTGGGATATTTGAAGCAAGTAAATTGGTGTTGATAAA