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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAAATTCCTGCTGGAAGTGTGCTGAGATCTGCATTGGCAGGTGGCCTTTCTTGTGCCCTGTCATGTGCATTACTGCATCCAGTTGATACAATTAAGgtatgttcttgaactttcatgaacttattgatttctctggtgattcatgtctttgtttgtgtaatgcatataattccatattcctctcttagccgtttgatttttttggtttcttttagaggcctcatcattgtcttatactcttatttggtatattag

Basic information

species Glycine max
transcript GLYMA20G31800.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31800.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g03870.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGAAATTCCTGCTGGAAGTGTGCTGAGATCTGCATTGGCAGGTGGCCTTTCTTGTGCCCTGTCATGTGCATTACTGCATCCAGTTGATACAATTAAGgtatgttcttgaactttcatgaact-tattgatttctctggtg--attcatgtctttgtttgtgtaatg-catataattccatattcctctcttagccgtttgatttttttggtttcttttagaggcctcatcattgtcttatactcttatttggtatattag
||| |||||  ||||||||||||| |||||||||||||||||||| |||||| | ||||| || ||     | ||||||||||| |||||||| || |||| | |||||   |||   || |  | || | || |    | ||  | | |  |  |   || | |||     |||   | | ||  ||| | ||  ||  ||                                                             
TGTGGAAATATCTGCTGGAAGTGTTCTGAGATCTGCATTGGCAGGGGGCCTTGCATGTGCACTTTCTACCTCTTTACTGCATCCTGTTGATACGATAAAGgcaagttctcccactca-ataatttgtagtaatgtgctagatggaagtgacatgataaattttttaacaatttatggattc-taggcctatgttgccctgtt-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285853|gb|BI469744.1|BI469744
EST:     TTTCTTGTGCCCTGTCATGTGCATTACTGCATCCAGTTGATACAATTAAG                         ACTCGAGTACAAGCATCAACAATGTCCTTCCCTGAAATAATTTCTAAGCTG
genomic: TTTCTTGTGCCCTGTCATGTGCATTACTGCATCCAGTTGATACAATTAAGgtatgttctt ... ggtatattagACTCGAGTACAAGCATCAACAATGTCCTTCCCTGAAATAATTTCTAAGCTG