1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaattttctcttgagattctctagcaatattatcaaattttctgaatattgaatacccaggatgcttatgatgcctaaataaacatttatact...
species | Glycine max |
transcript | GLYMA20G31760.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAGGAGATEST: gi|208209626|gb|GE004345.1|GE004345
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: TCGGGCAGTTTTAAG GTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|207733230|gb|GD710032.1|GD710032
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTTACTTTGTTCTTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGEST: gi|193633314|gb|FK582886.1|FK582886
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TAC-TTG-TC-TTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAG
EST: TCGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208316022|gb|GE110990.1|GE110990
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208256540|gb|GE054037.1|GE054037
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|207773008|gb|GD744916.1|GD744916
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: GGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208209894|gb|GE006419.1|GE006419
genomic: GGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAEST: gi|208271397|gb|GE072603.1|GE072603
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: CGGGCAGTTTTAAG GTTACTTGTCTTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGEST: gi|193332005|gb|FK299429.1|FK299429
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagG-TACTTGTC-TTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAG
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193543207|gb|FK502470.1|FK502470
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTTGAAAGATGCGAATATACTAATGGAAGAGAEST: gi|208148041|gb|GD944127.1|GD944127
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAA-TTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193697015|gb|FK635315.1|FK635315
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|254345428|gb|GR855871.1|GR855871
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAEST: gi|208131226|gb|GD931113.1|GD931113
genomic: TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAA-Ggtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGA
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208298185|gb|GE092406.1|GE092406
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193348660|gb|FK314852.1|FK314852
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208153520|gb|GD945739.1|GD945739
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|207716671|gb|GD698145.1|GD698145
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208317520|gb|GE116217.1|GE116217
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTGAG GTACTTGTCTTCAGGCAATTCGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208150094|gb|GD951668.1|GD951668
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208158290|gb|GD956867.1|GD956867
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|207783116|gb|GD757137.1|GD757137
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193370602|gb|FK334882.1|FK334882
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193689259|gb|FK632646.1|FK632646
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAG-TTTAAG GTACTTGTCTTCAGGCAA-TTGAAAGANGCGAACATACTAATGGAAGAGATEST: gi|207829276|gb|GD798154.1|GD798154
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: TCGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193654022|gb|FK597010.1|FK597010
genomic: TCGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTATTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193593608|gb|FK548002.1|FK548002
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|208135113|gb|GD928832.1|GD928832
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193526419|gb|FK486661.1|FK486661
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|207763580|gb|GD736667.1|GD736667
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGATEST: gi|193710399|gb|FK648655.1|FK648655
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
EST: CGGGCAGTTTTAAG GTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
genomic: CGGGCAGTTTTAAGgtaaatgtaa ... tgcatgatagGTACTTGTCTTCAGGCAATTTGAAAGATGCGAACATACTAATGGAAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTATCCTGGTGAAGACGATTTGGCCATTGCTCGGGCAGTTTTAAGgtaaatgtaattttctcttgagattctctagcaatattatcaaattttctgaatattgaatacccaggatgcttatgatgcctaaataaacatttatact
- - - - - TGAAGA