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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTTTCTGCTCAGAGGTACTCTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacattttctatttcaatgtctttcaagatacacttttgtcaactttatagtttttagtctggctctggcatatatagtgattaatagattgttca...

Basic information

species Glycine max
transcript GLYMA20G31760.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193630930|gb|FK579065.1|FK579065
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|254345428|gb|GR855871.1|GR855871
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|298188366|gb|HO035059.1|HO035059
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: gi|193577191|gb|FK536596.1|FK536596
EST:     CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG                         GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA