1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaattcatttctggtgttaaaatatttatatttatgataaaaaaaaagatagagtacacttgacaaacagcaaagattaatacttattttctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACGATGAGGAAATTCTTG
species | Glycine max |
transcript | GLYMA20G31760.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAEST: gi|254345428|gb|GR855871.1|GR855871
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAEST: gi|298188366|gb|HO035059.1|HO035059
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAEST: gi|193577191|gb|FK536596.1|FK536596
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
EST: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAG GTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
genomic: CATTAGATATCCTACATTCAGGAGCGTGCATTCAGTTGTCTCATGGGCAGgttctacatt ... ctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAA
aagatagagtacacttgacaaacagcaaagattaatacttattttctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACGATGAGGAAATTCTTG
gattaat putative branch site (score: 3)
tacttattttctctct CT-rich tract
aaagattaatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattcatttctggtgttaaaatatttatatttatgataaaaaaaaagatagagtacacttgacaaacagcaaagattaatacttattttctctcttaagGTTACCTGTGGAGCAGAGTTAGCTTTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACGATGAGGAAATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA