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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttatctttccagtagagcttaaatatcttgttgataagatcttgatttttcatctattgaactctgcattcataaacagttactgcaaaattacaaagtttctctagttcataatgtgacaatttatatgattaccaatattcattgcagACATCAGCCTCATTTTTCTCGCCTTGCTAATTGGGAAGGGATAGAAAAG

Basic information

species Glycine max
transcript GLYMA20G31690.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208129013|gb|GD930581.1|GD930581
EST:     AAGTTTTATGATAAAGCACTTGCAATTGGACTTCAAGGTTATGCAAAATT                         ACATCAGCCTCATTTTTCTCGCCTTGCTAATTAGGGAAAGGGATAGAAAAG
genomic: AAGTTTTATGATAAAGCACTTGCAATTGGACTTCAAGGTTATGCAAAATTgtatgtctta ... ttcattgcagACATCAGCCTCATTTTTCTCGCCTTGCTAATT-GGGAA-GGGATAGAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtttctctagttcataatgtgacaatttatatgattaccaatattcattgcagACATCAGCCTCATTTTTCTCGCCTTGCTAATTGGGAAGGGATAGAAAAG
                         aatttatatgattacc  TA-rich tract