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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCATTTATGTGCAATCTGTTTCGATTCCGCTTCTCTGTATTAGTGCTCTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacgctgcttcattgttttccttggttctaattattttgatttctcttgcattacttcaacatcaatttaatgttctactatttttatag

Basic information

species Glycine max
transcript GLYMA20G31690.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31690.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g35730.1 (Oryza sativa), 5'ss of exon 11
GTTCCATTTATGTGCAATCTGTTTCGATTCCGCTTCTCTGTATTAGTGCTCTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacgctgcttcattgttttccttggttctaattattttgatttctcttgcattacttcaacatcaatttaatgttctactatttttatag
|| | | |||  |      ||| ||  | || || || ||||| |||||||| ||||| ||  | || || ||||| |||||||||||||| ||||||||||| |||   |  || |||     | |    ||  |   | ||| |  || |||  |         |||   || |  |            
GTGCAAATTACATTAGTAATGTGTCAGTGCCCCTGCTTTGTATCAGTGCTCTTGATGACCCACTTTGCACAAGGGAGGCCATTCCCTGGGACGAATGCAGgtaagcttactt-ttctttcaaaagatcaccatcctaaagttttattgtgtattgatgaggtccacattgtgtgattcag-----------

upper sequence: GLYMA20G31690.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G011169_T01 (Zea mays), 5'ss of exon 11
GTTCCATTTATGTGCAATCTGTTTCGATTCCGCTTCTCTGTATTAGTGCTCTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacgctgcttcattgttttccttggttctaattattttgatttctcttgcattacttcaacatcaatttaatgttctactatttttatag
|| | | |||| |      ||| ||  |||| || || ||||| |||||  | ||||| ||  |||| || ||||| ||||||||||||||||||||||||||  |      |   |      |  |||| | ||||||    | |  ||  ||  |    |    ||  | ||  ||  | |        
GTGCAAATTATATCGGTAATGTGTCAGTTCCACTGCTTTGTATCAGTGCCTTAGATGACCCCCTCTGCACAAGGGAGGCCATTCCCTGGGATGAATGCAGgtaaaca----tacgatgaaagattattctgaatattttttggtttaatgtgttgataaggcccttatgca-tgcgctgatttag------

upper sequence: GLYMA20G31690.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G34340.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTCCATTTATGTGCAATCTGTTTCGATTCCGCTTCTCTGTATTAGTGCTCTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacgctgcttcattgttttccttggttctaattattttgatttctcttgcattacttcaacatcaatttaatgttctactatttttatag
|  |    || ||   |  |||  || | || || |||||||| |||||||| ||||||||  | || || | |||||| ||||||||||| ||||||||||| |  |||  ||   | || ||     |||  || || | | || || ||    || ||||| || ||  | ||  |            
GCACTCAATACGTAGGAAATGTGGCGGTGCCACTACTCTGTATAAGTGCTCTAGATGATCCATTATGCACAAAGGAAGCTATTCCCTGGGACGAATGCAGgtaagacgct--atctatctcttt----ttaa--atcttaaatcctgttacagcgatt-aacatgaagtttctattgaaaag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342161|gb|CO983422.1|CO983422
EST:     CTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAG                         GGCGAATAAAAATATTGTTCTGGCTACTGTAAAGCATGGAGGACATCTGGC
genomic: CTGGATGATCCTGTCTGTACCAGGGAAGCCATTCCCTGGGATGAATGCAGgtacgctgct ... atttttatagGGCGAATAAAAATATTGTTCTGGCTACTGTAAAGCATGGAGGACATCTGGC