1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taggattattgtgcatctcaatactgtgatcctgttctggtttaatagttttcttgttttcttcctctagtaatgcaatttctcattaaaataatttcagTCTGATTGTTTCTACAATGCTGGATGGACTGAGGATGTCCGCACAGTGGTTAATTATCTACACAAAGAGAACCCCAGGGCACCTTTGTTTGTTGTTGGGA
species | Glycine max |
transcript | GLYMA20G31690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGTTTGT-GTCAGTAATCACCGAGGACTTGGAGGTGTTTCAATCACG TCTGATTGTTTC
genomic: GAAAGTT-GTTGTCAGTAATCACCGAGGACTTGGAGGTGTTTCAATCACGgttagtttta ... ataatttcagTCTGATTGTTTC
tagttttcttgttttcttcctctagtaatgcaatttctcattaaaataatttcagTCTGATTGTTTCTACAATGCTGGATGGACTGAGGATGTCCGCACAGTGGTTAATTATCTACACAAAGAGAACCCCAGGGCACCTTTGTTTGTTGTTGGGA
taatgcaatttctcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggattattgtgcatctcaatactgtgatcctgttctggtttaatagttttcttgttttcttcctctagtaatgcaatttctcattaaaataatttcagTCTGATTGTTTCTACAATGCTGGATGGACTGAGGATGTCCGCACAGTGGTTAATTATCTACACAAAGAGAACCCCAGGGCACCTTTGTTTGTTGTTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - -tgcatct
- - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - -tcctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcaa