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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtccaaacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttattatagttgaagaaatgcaaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCCCAGATTATTGAGGACCCCAAAGATCTTACTT

Basic information

species Glycine max
transcript GLYMA20G31630.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31630.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtgagagtccaaacatttgtgtatctaggagtatgacttatttattgttagaaaaatgtaaatccagttccagacttctgtttattatagttgaagaaatgcaa-atttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCCCAGATTATTGAGGACCCCAAAGATCTTACTT
|| |   |||  | || | | |  | |     |  | || |  |   |        | |  ||  | ||      | | |||| |||  | ||   | |||||| || ||||||| |||||||| || |||||||| ||||| |||||||||||| ||||||| |||||||||||| || || ||||||| || |||||||||||||||||||
gtaattttccttagatctctctccccaaattgagaatttctacaccat-----gtgtttggatttattt------tacagtttcttac-gctgggaacatgcaatatctgcagGTGAATGTTACAGCAGATCATCGGGTAATATATGGTGCTGATCTGGCTTCTTTCTTGCAAACCTTGGCCAAGATTATAGAAGACCCCAAAGATCTTACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207747995|gb|GD720868.1|GD720868
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|207842036|gb|GD813696.1|GD813696
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|208164905|gb|GD962879.1|GD962879
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTG
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTG
EST: gi|192313139|gb|FK003721.1|FK003721
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193619229|gb|FK569431.1|FK569431
EST:     CAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAACCTATGGTGCTGATTTGGCTTCA
genomic: CAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193567349|gb|FK523392.1|FK523392
EST:     CATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTGTGGTGCTGATTTGGCTTCA
genomic: CATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|18039518|gb|BM307812.1|BM307812
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|207786366|gb|GD757065.1|GD757065
EST:     CATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|208310067|gb|GE109795.1|GE109795
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|208070795|gb|GD869260.1|GD869260
EST:     TGGCTACAAAGGATGGTTCGCATTGGCATGTAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: TGGCTACAAAGGATGG-TCGCATTGGCATG-AAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|208143451|gb|GD942469.1|GD942469
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|298180893|gb|HO022332.1|HO022332
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGGAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|192313138|gb|FK003720.1|FK003720
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193489343|gb|FK455346.1|FK455346
EST:     GTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: GTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193555157|gb|FK515154.1|FK515154
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTAGCTGATTTGG
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGT-GCTGATTTGG
EST: gi|208274109|gb|GE073285.1|GE073285
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGT
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGT
EST: gi|22929725|gb|BU546864.1|BU546864
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|7591481|gb|AW707213.1|AW707213
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAG                         GTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193545458|gb|FK503531.1|FK503531
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTGATCTATGG
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGG
EST: gi|207721332|gb|GD702389.1|GD702389
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCCATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|193664881|gb|FK611625.1|FK611625
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTAGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
EST: gi|9204994|gb|BE331218.1|BE331218
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTC-
EST: gi|207753601|gb|GD725999.1|GD725999
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCG
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCG
EST: gi|207823490|gb|GD794109.1|GD794109
EST:     CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAG                         GTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA
genomic: CTGTTGTGGCTACAAAGGATGGTCGCATTGGCATGAAGAACCAAATGCAGgtgagagtcc ... aaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatccagttccagacttctgtttattatagttgaagaaatgcaaatttgcagGTTAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGTCCCAGATTATTGAGGACCCCAAAGATCTTACTT
                       tttattatagttgaa  TA-rich tract