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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag

Basic information

species Glycine max
transcript GLYMA20G31630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G165176_T01 (Zea mays), 5'ss of exon 6
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgag-tgttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag
| || || ||||| || ||||| || |||||||| |||||| | |||||||| || ||||||||||||||||| || ||      || | ||               |||  | | || |     | |   ||||| ||    | ||   | |||  | | | ||| ||  |   |  ||
GCACGTTTACTCTCTCGAATCTTGGTATGTTTGGAGTTGATAGGTTTGATGCAATACTGCCACCTGGAACTgtaagatgcacagtttatttt---------------attctccatttctatttttcatg-cagtgctg---tataccttactga--aatatgtgggttactaaatacag

upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G036534_T02 (Zea mays), 5'ss of exon 5
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagt------gttttacttgtgttcaaatatggcaagagattgactagttgt-tccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag
| || || ||||| || ||||| || |||||||| |||||| | || ||||| || ||||||||||||||||| ||        |||   || |  || | |        |     | |     |  || | |  || |     |||| ||  |||||                            
GCACCTTTACTCTTTCGAATCTTGGTATGTTTGGAGTTGATAGGTTCGATGCAATACTGCCACCTGGAACTgtaagatggacaatttattttattctccatttctattttaatgcaattctgcataccctactgaaatatc--cgggttac-tgaaaacag-------------------------

upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G34430.1 (Arabidopsis thaliana), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtg-ttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag-----------
|||| |||||||| || || || |||||||||||||||||||| |||||||||||||| || |||||||| || |||| |||||| | | | |   |||   |     |    | ||| |  |  ||||   | | ||     |  | ||    | ||    || | |||  |||| |             
GTACCTTCACTCTCTCTAACCTAGGAATGTTTGGCGTTGATCGGTTTGATGCTATTCTACCCCCTGGAACAgttagtgcttttacctttatgcgtgtattttagtttgtatcttggttatgtcttttagcctaataat----tatgctaaggataacagctcattggttttcttgtctttgatcaatgaag

upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0072g01000.t01 (Vitis vinifera), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttactt--gtgttcaaatatggcaa------gagattgactagttgttccaatta-gaacagtgatgggtca--------cacgaaaatgatcattctatggatttatttgtgtag-------
||||||||||||| || || || ||||||||||| || ||||| ||||| || |||||||||||||||||||| ||| ||| |  |  |  ||  ||  |  | |       | ||| |    |||   ||  || | |  | |  ||   |        || || ||  || ||| | | |||||   ||| |         
GTACTTTCACTCTTTCAAACCTTGGAATGTTTGGTGTGGATCGGTTTGACGCAATTCTGCCACCTGGAACTgtaagtatttaaactcagaatttgaacctctccactctgcaaaattcatagcttggggcagatatggaatgagggggactaaattgtatcaggataaacataattatgttgatttgcatgttttttctgcag

upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ37696 (Selaginella moellendorffii), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag
| ||||||||| |||| || ||||| ||||||||||||||| | ||||| || ||||| ||||| || || || ||| | || ||||  |  | |       |   ||     |  | | |||                                                        
GAACTTTCACTTTGTCAAACCTGGGGATGTTTGGCGTTGATAGGTTTGACGCGATTCTCCCACCCGGCACGgtaagt-tcttccttggatcaacaatccctgattcatctcgaaactttcccag-------------------------------------------------------

upper sequence: GLYMA20G31630.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ14990 (Selaginella moellendorffii), 5'ss of exon 4
GTACTTTCACTCTGTCCAATCTGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttttacttgtgttcaaatatggcaagagattgactagttgttccaattagaacagtgatgggtcacacgaaaatgatcattctatggatttatttgtgtag
| ||||||||| |||| || ||||| ||||||||||||||| | ||||| || ||||| ||||| || || || |||  ||   | |   |   | ||    |     ||| |  |  |   || |    |||                                              
GAACTTTCACTTTGTCAAACCTGGGGATGTTTGGCGTTGATAGGTTTGACGCGATTCTCCCACCCGGCACGgtaagttcttccttggcacttctagatcaacaatccctgattcatc-tcgaaactttcccag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208326317|gb|GE121483.1|GE121483
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|207842036|gb|GD813696.1|GD813696
EST:     CGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: CGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|208164905|gb|GD962879.1|GD962879
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACTTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|192313139|gb|FK003721.1|FK003721
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|18039518|gb|BM307812.1|BM307812
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|208310067|gb|GE109795.1|GE109795
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|7691381|gb|AW759439.1|AW759439
EST:     TGGGAATGTATGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGCAACT                         GGAGCAATAATGGCTGTT
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTT
EST: gi|208249676|gb|GE045439.1|GE045439
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTG
EST: gi|193609301|gb|FK562949.1|FK562949
EST:     TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|208143451|gb|GD942469.1|GD942469
EST:     CCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: CCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|298180893|gb|HO022332.1|HO022332
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|192313138|gb|FK003720.1|FK003720
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|193555157|gb|FK515154.1|FK515154
EST:     TGGGGATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|208274109|gb|GE073285.1|GE073285
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACTTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|22929725|gb|BU546864.1|BU546864
EST:     TGGGAATGTNNNGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|7591481|gb|AW707213.1|AW707213
EST:     TGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|207681905|gb|GD662470.1|GD662470
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|193545458|gb|FK503531.1|FK503531
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|207721332|gb|GD702389.1|GD702389
EST:     T-GGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|193664881|gb|FK611625.1|FK611625
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|9204994|gb|BE331218.1|BE331218
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|207753601|gb|GD725999.1|GD725999
EST:     TGGGAATGTTTGACGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
EST: gi|207823490|gb|GD794109.1|GD794109
EST:     TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACT                         GGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG
genomic: TGGGAATGTTTGGCGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTgtgagtgttt ... atttgtgtagGGAGCAATAATGGCTGTTGGAGCATCCGAGCCCACTGTTGTGGCTACAAAG