Sequence
atgc intronic sequence ATGC exonic sequenceTGACCGGTTTACCCCTCGTGATCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaacttaagcacagctacatgttgatagtttctttgcgttgtgtcgtaaggtagatgctctagtggtagtgatgaaagtagcatttaatgttttttcttgtctttttatgtccag
Basic information
species | Glycine max |
transcript | GLYMA20G31590.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g09170.1 (Oryza sativa), 5'ss of exon 6
TGACCGGTTTACCCCTCGTGATCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaacttaagca--cagctacatgttgatagtttctttgcgttgtgtcgtaaggtagatgctctagtggtagtgatgaaagtagcatttaatgttttttcttgtctttttatgtccag
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TGATCGATTCACACCTCGTGACCAGCTCAGCTTTGCATATACATATTTGAAGCTTAGAAGAATGAACCCGGAGAAGCCATTTCGCCTTAATATGTTTAAGgtgggtacagttgaccatctagctagctagtttgaccgcaaccatactaaatc-taatttacatgctattctcgttcag--------------------------------------------
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G34550.1 (Arabidopsis thaliana), 5'ss of exon 7
TGACCGGTTTACCCCTCGTGATCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaacttaagcacagctacatgttgatagtttctttgcgttgtgtcgtaaggt-agatgctctagtggtagtgatgaaagtagcatttaatgttttttcttgtctttttatgtccag
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GGAACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTACCAGAAACTAAGAAGGATGAATCCTGATAAACCATTTAATCTTCACATGTTCAAGgtaaag--atctcttttttgaaaagtcttcatgattatctaaactattgatttgcctccatgtgtgtaagctgggtttagaattgtaatgtcaaaagtgctc--------------------
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 6
TGACCGGTTTACCCCTCGTGATCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaacttaagcacagctacatgttgatagtttctttgcgttgtgtcgtaaggtagatgctctagtggtagtgatgaaagtagcatttaatgttttttcttgtctttttatgtccag
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TGATCGATTTACTCCTCGTGATCAACTAAGCTTTGCATACACATATCAAAAGTTGAGAAGGGTTAATCCAGGCAAACCATTTCATCTTAATATGTTCAAGgtgaagaa-ttttattata-ttgcacatcaaccaaaa---tgaatggaaatgttataacagccctttaggcctgggtcaattagcaagatttt-tggatggagttg---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677734|gb|BQ630085.1|BQ630085EST: AGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAG GACTGTGAAAGGAGACACATAGCCAAGCTGTTCCGTCATAGGTTGGACGAG
genomic: AGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaac ... ttatgtccagGACTGTGAAAGGAGACACATAGCCAAGCTGTTCCGTCATAGGTTGGACGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACCGGTTTACCCCTCGTGATCAGCTGAGTTTTGCATATACTTATCAGAAGCTGAGAAGGATGAATCCGGACAAACCTTTTCATCTGAATATGTTCAAGgtgaagaaacttaagcacagctacatgttgatagtttctttgcgttgtgtcgtaaggtagatgctctagtggtagtgatgaaagtagcatttaatgttttttcttgtctttttatgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG