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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTATAATCATACAGTCATAGATGAACAATTTGCATTTTACCGGGCTGATGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCAgtatgttctgttaatgatttttgtttttcttctgtcaattctcgaaatttgttgattaaatgtactgaaatgacttataatatcttttgacag

Basic information

species Glycine max
transcript GLYMA20G31590.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 5
AAGTATAATCATACAGTCATAGATGAACAATTTGCATTTTACCGGGCTGATGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCAgtatg-ttctgtt-aatgatttttgtttttcttctgtcaattctcgaa-----atttgttgattaaatgtactgaaatgacttataatatcttttgacag
|||||||| ||||   | |||||| | || |||||||| |||| ||||||||| ||| ||| |||  |||| |||||||| || ||||||||||| ||||||||| || |||| ||  || | | | ||| || ||  || | |  |      || | ||| ||  |    ||    | | || |    ||| |||||||
AAGTATAACCATAGTATTATAGATCAGCAGTTTGCATTCTACCAGGCTGATGGGCTGAAAAGATTCAATGCCTCAGATCCTAACAAGCTTCTTCCCAGCAgtatgattttgttcaagaatctctctattttttatgctaaatttgcagcttgcatctattgtttccaca-gctttctttatttgtttgctctattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057530|gb|BU578204.1|BU578204
EST:     TGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCA                         ATGTACCTGAAGGTTCTTTTATTATCAGAGCACACACTCCGATGTCAAATT
genomic: TGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCAgtatgttctg ... cttttgacagATGTACCTGAAGGTTCTTTTATTATCAGAGCACACACTCCGATGTCAAATT
EST: gi|21677734|gb|BQ630085.1|BQ630085
EST:     TGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCA                         ATGTACCTGAAGGTTCTTTTATTATCAGAGCACACACTCCGATGTCAAATT
genomic: TGGACTGGAAAAATTTGATGCATCAGATCCAAATAAGCTTCTTCCAAGCAgtatgttctg ... cttttgacagATGTACCTGAAGGTTCTTTTATTATCAGAGCACACACTCCGATGTCAAATT