Sequence
atgc intronic sequence ATGC exonic sequenceGACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgtaatgcttctactttatcttctatttcagtttgtggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt...
Basic information
species | Glycine max |
transcript | GLYMA20G31590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G09630.1 (Arabidopsis thaliana), 5'ss of exon 3
GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgta--atgcttctactttatcttctatttcagtttgtggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt-----
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GACAGAAGATGATGCTAACTATATCAGTAAATGTCACATTGCTGTGATATCCTGTATCTTTGGAAACTCTGATCGCTTGAGGCATCCTGCTAATAAAATGgtatgataatgtaagcccttgatgtattttcatgt-tgtagttttcttcttatttccacctctagaatt-----tgaaattcctaaccac-tattctctgttagcat
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G34550.1 (Arabidopsis thaliana), 5'ss of exon 4
GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgtaatgcttctactttatcttctatttca-gtttgtggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt---
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GACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGCATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGgta-tgcttctg-tccatcgtttagattatgtttatgttgtggtcgtttcttttccatgttaagatttggaaacta--tgaccagtgagttgtgtatgtttaga
upper sequence: GLYMA20G31590.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0072g01020.t01 (Vitis vinifera), 5'ss of exon 3
GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgta--atgcttctact-ttatcttctatttcagtttg-tggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt
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GGCAGAAGATGACGTGCGCTATATTAGCAGTTGCCATATTGCTGTAATTTCTTGCATTTTTGGAAATTCAGATCGCTTGAGATCTCCTGCAGGAAAAACGgtatgagtcttcttctattattgtatgtttttttttaactatatttgatatctatatatatat-atatactatttgt---ttattgaataaactggttgtacctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23057530|gb|BU578204.1|BU578204EST: GCTTGAGGACCCCAGCCACCAAAACA GTCACTCGATTGTCAAGGAAGAATGTCTGCTTTGTGATGTTTACTGATGAA
genomic: GCTTGAGGACCCCAGCCACCAAAACAgtaatgcttc ... atgatttcagGTCACTCGATTGTCAAGGAAGAATGTCTGCTTTGTGATGTTTACTGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACAGAAGATGATGCAAATTACATCAGCAGGTGCCACATTGCTGTGATTTCATGCATATTTGGAAATTCTGATCGCTTGAGGACCCCAGCCACCAAAACAgtaatgcttctactttatcttctatttcagtttgtggggttggagaggtgtttggagttgaaaaatcatgtgtgaattttccagtaaaatattacttttt
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