1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attatgaattgtttgttctcttaaatttgatgtgttcatcttcaaaaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG
species | Glycine max |
transcript | GLYMA20G31330.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|21888443|gb|BQ741656.1|BQ741656
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: TTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|192316805|gb|FK006060.1|FK006060
genomic: TTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|51343389|gb|CO984122.1|CO984122
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|23051895|gb|BU577114.1|BU577114
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|192310896|gb|FK000343.1|FK000343
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: GCCCTTGCTCCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGAEST: gi|192300197|gb|FG989319.1|FG989319
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
EST: GCCCTTGCTCCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAG TGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
genomic: GCCCTTGCTTCTCATTCAGATTCCATTGAGTGTGTTGGGTTTGCACCAAGgtatgtgtta ... tgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGA
aaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG
ttaaaattgtatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatgaattgtttgttctcttaaatttgatgtgttcatcttcaaaaaaaaaaaatgaaccgagtcatcaataatgttgtcccttaaaattgtatgatagTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAACTTATCATCTGGGATATAGAGCATTTATTACCCCGAGGCACTTGTGAACATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA